基础的ECG信号降噪(Python)

摘要:from wfdb import *import numpy as npimport pandas as pdimport matplotlib.pyplot as pltimport find_filter_coefficients as find_fcim

from wfdb import *import numpy as npimport pandas as pdimport matplotlib.pyplot as pltimport find_filter_coefficients as find_fcimport find_wavelet_coefficients as fwcfrom scipy.signal import butter, filtfilt, resampledef read_data(dir, record_number, ch=0):"""Read ECG signals and annotationsArgs:dir: Path to the datasetrecord_number: Record Number or Namech: channel numberReturns:ecg_record, ecg_ann : ECG signal and it's annotations."""record_name = dir + str(record_number)ecg_record = rdrecord(record_name, channels=[ch])ecg_ann = rdann(record_name, extension='atr')return ecg_record, ecg_anndef lowpass(signal, cutoff, fs, order):nyquist = 0.5 * fsnormal_cutoff = cutoff / nyquistb, a = butter(order, normal_cutoff, btype='low', output='ba', analog=False)[:2]y = filtfilt(b, a, signal)return np.array(y)def highpass(signal, cutoff, fs, order):nyquist = 0.5 * fsnormal_cutoff = cutoff / nyquistb, a = butter(order, normal_cutoff, btype='high', output='ba', analog=False)[:2]y = filtfilt(b, a, signal)return np.array(y)def filter_signal(signal, low_cut, high_cut, fs):"""Find the signal without frequency components higher than 40Hz and less than 0.5Hz.Args:signal: Raw ECG Signalfs: Sampling rate of the given raw ECG signalReturns:Signal without frequency components higher than 40Hz and less than 0.5Hz as an array"""filtered_signal1 = lowpass(signal, cutoff=low_cut, fs=fs, order=5)filtered_signal2 = highpass(signal, cutoff=high_cut, fs=fs, order=5)filtered_ecg = signal - filtered_signal1 - filtered_signal2 # Subtract low frequency components and high# frequency components from the original signalreturn np.array(filtered_ecg)def load_mit_datset(records):"""Prepare the dataset for the classification task"""fs = 360 # sampling rate of the MIT-BIH recordsdirectory = "dataset//mit-bih-arrhythmia-database-1.0.0//" # path to the databasedataset = pd.DataFrameX = y = for rec_no in records:try:if rec_no == 114: # MLII is channel 1 not 0ecg_record, ecg_annotations = read_data(directory, rec_no, ch=1)else:ecg_record, ecg_annotations = read_data(directory, rec_no)except FileNotFoundError:print(f"Record {rec_no} not found")continuesamples = ecg_annotations.sampleecg_signal = ecg_record.p_signal[:, 0] # only take the first channel ( lead 1)ecg_signal_filtered = filter_signal(ecg_signal, 0.5, 40, fs) # filter the signalsymbols = ecg_annotations.symbolplt.figure(figsize=(20, 5)) # Set the figure sizeplt.plot(ecg_signal[:5000], label="Original ECG Signal")plt.plot(ecg_signal_filtered[:5000], label="Filtered ECG Signal")plt.xlabel("Samples")plt.ylabel("Amplitude")plt.title("ECG Signal and Filtered Signal")plt.legendplt.showload_mit_datset([106])

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担任《Mechanical System and Signal Processing》《中国电机工程学报》等期刊审稿专家,擅长领域:信号滤波/降噪,机器学习/深度学习,时间序列预分析/预测,设备故障诊断/缺陷检测/异常检测。

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来源:科技浪潮之巅

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